The need for biological assessment of water quality: Australian perspective

Abstract Biological assessment of water quality in Australia is entering a stage of rapid development largely because of the inclusion of biological indicators in water quality guidelines and growing concern for ecological values. Approaches to water quality assessment include toxicity testing, use of biomarkers and several methods using community structure. For assessment diverse organisms such as fish, algae and (the most commonly used) macro-invertebrates are used. Interaction of data analysis with methods of data collection requires co-ordinated research on both fronts. Recent developments in the use of multivariate statistics to produce models for predicting water quality are likely to be useful in Australia. Much innovative work is still needed in Australia on the use of algae and fish, defining tolerance categories and establishing monitoring programmes performed in time-frames equivalent to those in use for physical and chemical methods.     

Conservation of two predator species for biological control ofChrysophtharta bimaculata (Col.: Chrysomelidae) in tasmanian forests

Chrysophtharta bimaculata (Olivier) (Coleoptera: Chrysomelidae) is a major defoliator of regeneration eucalypt trees in Tasmania causing a significant reduction in height and diameter increment of trees which reduces wood volume per hectare. A study to conserve and enhance the efficiency of coccinellid species chieflyCleobora mellyi (Mulsant) (Coleoptera: Coccinellidae), and the cantharid,Chauliognathus pulchellus (Macleay) (Coleoptera: Cantharidae), for the biological control ofC. bimaculata was conducted in young regeneration forests in southern Tasmania from 1991–92. Cantharid adults and coccinellid adults and larvae feed onC. bimaculata eggs and, to a lesser extent, young larvae. The study found that coccinellids were more active throughout the egg and early (1^st and 2^nd) stage ofC. bimaculata. The cantharid, however was active only during the egg stage of the prey and then disappeared from the plantation. The coccinellids were therefore the most useful predators, but their population declined when the prey reached the 3^rd and 4^th stages. As shortage of food may account for this decline, supplementary food was provided in the form of sucrose sprays or sugar granules at a feeding station. This resulted in the retention of both predators and particularly the coccinellids and enhanced their efficacy.     

An Evaluation of Revegetation Success on Bauxite Residue

The current study was undertaken to evaluate the success of a revegetation program on three sites within the Bauxite Residue Disposal Area at the Aughinish Alumina Ltd. refinery. This was achieved by determining botanical diversity, substrate conditions, and plant uptake. Two sites revegetated in 1999, with and without the use of gypsum, were assessed and compared to a site revegetated in 1997. Compared to an initial 6 species used in seeding, a total of 47 species were recorded growing on the three sites with greatest diversity on the 1997 site. There was limited variation in the residue properties of the three treatments indicating that diversity was most influenced by succession and not substrate conditions. Limited available manganese was found in all treatments and significantly lower exchangeable magnesium in the gypsum-amended treatment. Exchangeable sodium, aluminum, and pH in the substrate were not at levels of concern. Appreciable nitrogen, phosphorus, and potassium were found as a result of a fertilizing program. Dominant species in the 1999 treatments, Holcus lanatus and Trifolium pratense , were analyzed for elemental composition. Compared to previous studies, foliar nitrogen, phosphorus, potassium, and calcium were adequate and sodium levels were low. Manganese and magnesium levels were low, and availability should be assessed as part of the monitoring program. Furthermore, the effect of a fertilizing regime on plant uptake and substrate conditions needs to be assessed.     

Effect of soil water stress on soil respiration and its temperature sensitivity in an 18-year-old temperate Douglas-fir stand

We analyzed 17 months (August 2005 to December 2006) of continuous measurements of soil CO₂ efflux or soil respiration (R_S) in an 18‐year‐old west‐coast temperate Douglas‐fir stand that experienced somewhat greater than normal summertime water deficit. For soil water content at the 4 cm depth (θ) > 0.11 m³ m^?3 (corresponding to a soil water matric potential of ?2 MPa), R_S was positively correlated to soil temperature at the 2 cm depth (T_S). Below this value of θ, however, R_S was largely decoupled from T_S, and evapotranspiration, ecosystem respiration and gross primary productivity (GPP) began to decrease, dropping to about half of their maximum values when θ reached 0.07 m³ m^?3. Soil water deficit substantially reduced R_S sensitivity to temperature resulting in a Q₁₀ significantly < 2. The absolute temperature sensitivity of R_S (i.e. dR_S/dT_S) increased with θ up to 0.15 m³ m^?3, above which it slowly declined. The value of dR_S/dT_S was nearly 0 for θ < 0.08 m³ m^?3, thereby confirming that R_S was largely unaffected by temperature under soil water stress conditions. Despite the possible effects of seasonality of photosynthesis, root activity and litterfall on R_S, the observed decrease in its temperature sensitivity at low θ was consistent with the reduction in substrate availability due to a decrease in (a) microbial mobility, and diffusion of substrates and extracellular enzymes, and (b) the fraction of substrate that can react at high T_S, which is associated with low θ. We found that an exponential (van't Hoff type) model with Q₁₀ and R₁₀ dependent on only θ explained 92% of the variance in half‐hourly values of R_S, including the period with soil water stress conditions. We hypothesize that relating Q₁₀ and R₁₀ to θ not only accounted for the effects of T_S on R_S and its temperature sensitivity but also accounted for the seasonality of biotic (photosynthesis, root activity, and litterfall) and abiotic (soil moisture and temperature) controls and their interactions.     

ImShot: An Open-Source Software for Probabilistic Identification of Proteins In Situ and Visualization of Proteomics Data

Imaging mass spectrometry (IMS) has developed into a powerful tool allowing label-free detection of numerous biomolecules in situ. In contrast to shotgun proteomics, proteins/peptides can be detected directly from biological tissues and correlated to its morphology leading to a gain of crucial clinical information. However, direct identification of the detected molecules is currently challenging for MALDI–IMS, thereby compelling researchers to use complementary techniques and resource intensive experimental setups. Despite these strategies, sufficient information could not be extracted because of lack of an optimum data combination strategy/software. Here, we introduce a new open-source software ImShot that aims at identifying peptides obtained in MALDI–IMS. This is achieved by combining information from IMS and shotgun proteomics (LC–MS) measurements of serial sections of the same tissue. The software takes advantage of a two-group comparison to determine the search space of IMS masses after deisotoping the corresponding spectra. Ambiguity in annotations of IMS peptides is eliminated by introduction of a novel scoring system that identifies the most likely parent protein of a detected peptide in the corresponding IMS dataset. Thanks to its modular structure, the software can also handle LC–MS data separately and display interactive enrichment plots and enriched Gene Ontology terms or cellular pathways. The software has been built as a desktop application with a conveniently designed graphic user interface to provide users with a seamless experience in data analysis. ImShot can run on all the three major desktop operating systems and is freely available under Massachusetts Institute of Technology license.     

The role of 14-3-3 proteins in cell signalling pathways and virus infection

14-3-3 proteins are highly conserved in species ranging from yeast to mammals and regulate numerous signalling pathways via direct interactions with proteins carrying phosphorylated 14-3-3–binding motifs. Recent studies have shown that 14-3-3 proteins can also play a role in viral infections. This review summarizes the biological functions of 14-3-3 proteins in protein trafficking, cell-cycle control, apoptosis, autophagy and other cell signal transduction pathways, as well as the associated mechanisms. Recent findings regarding the role of 14-3-3 proteins in viral infection and innate immunity are also reviewed.     

接种丛枝菌根真菌对云南石漠化土壤呼吸的影响

为探明"丛枝菌根（Arbuscular mycorrhiza，AM）真菌-植物-土壤"耦合作用对石漠化土壤呼吸季节动态的影响，采用LI-6400-09土壤呼吸室和便携式光合作用测量系统，对圆柏（Sabina chinensis）接种摩西斗管囊霉（Funneliformis mosseae，FM）、根内根孢囊霉（Rhizophagus intraradices，RI）2种AM菌种处理下土壤呼吸季节动态进行野外连续定位观测，并探究AM真菌接种处理下石漠化土壤呼吸速率与植物生长、土壤理化性质之间的关系。结果表明：（1）相较于对照，接种AM真菌对石漠化生境土壤呼吸季节动态产生了显著影响（P<0.01）。AM真菌处理具有较高的土壤呼吸季节变化幅度，即根内根孢囊霉处理土壤呼吸速率（1.55-9.10 μmol m^-2 s^-1）显著高于摩西斗管囊霉（1.62-8.29 μmol m^-2 s^-1）和对照（1.23-4.46 μmol m^-2 s^-1）；（2） AM真菌接种处理下土壤温湿度变化对土壤呼吸的影响显著大于对照，即土壤温度与水分对土壤呼吸的平均解释量大小顺序为：RI （44.84%；52.35%）>FM （17.18%；41.65%）>CK （2.66%；16.55%）；（3）2种菌种处理下土壤呼吸速率均与土壤有机质、硝态氮、全氮、速效钾、树高、胸径及根系生物量呈显著或极显著正相关（P<0.01或0.05），而与pH呈极显著负相关（P<0.01），但对照处理土壤呼吸速率除与pH呈显著负相关（P<0.05）外，与其它土壤理化指标相关性不显著；（4）土壤温度和水分、硝态氮、铵态氮、有机质、易氧化有机碳、速效钾、全氮及全磷对土壤呼吸变化的贡献最大，而胸径、树高、有效磷、微生物生物量、根系生物量及pH的影响次之。因此，"AM真菌-寄主植物-土壤"相互作用对石漠化生境土壤呼吸季节动态的影响，主要取决于不同AM真菌接种处理对土壤微气候（如含水量）、碳素（有机质、易氧化有机碳）、无机氮库（铵态氮、硝态氮）、根系生物量及磷钾养分可利用性的调控。